Structure of PDB 4v78 Chain BF

Receptor sequence

>4v78BF (length=178) Species: 83333 (Escherichia coli K-12) [Search protein sequence]

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFRK

3D structure

PDB

4v78 Energy barriers and driving forces in tRNA translocation through the ribosome.

Chain

Resolution

20.0 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	BF	A74 K77	A74 K77
BS02	rna	BF	K32 N36 G38 G40 A42 K68 R70 K71 V73 A74 G75 F76 I84 G115 K119 S120 R124 N126 S128 G130 R132 R147 D152 T154 T156 R177	K32 N36 G38 G40 A42 K68 R70 K71 V73 A74 G75 F76 I84 G115 K119 S120 R124 N126 S128 G130 R132 R147 D152 T154 T156 R177
BS03	rna	BF	N22 M25 Q26 R29 Q62 L65 K87 R91	N22 M25 Q26 R29 Q62 L65 K87 R91

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:4v78, PDBe:4v78, PDBj:4v78
PDBsum	4v78
PubMed	24186064
UniProt	P62399\|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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