Structure of PDB 4uje Chain BF

Receptor sequence

>4ujeBF (length=188) Species: 9986 (Oryctolagus cuniculus)

IKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQC
PIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAI
INSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNI
KTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR

3D structure

• PDB: 4uje Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement.
• Chain: BF
• Resolution: 6.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BF	R127 G132 T133 V134 R136 R198	R111 G116 T117 V118 R120 R182
BS02	rna	BF	A131 G132 T133	A115 G116 T117
BS03	rna	BF	H51 A57 R60 R71 N74 M78 G80 N82 N83 G84 K85 L87 M88 R145 N148 R159 F163 R164 N165 T168 I169	H35 A41 R44 R55 N58 M62 G64 N66 N67 G68 K69 L71 M72 R129 N132 R143 F147 R148 N149 T152 I153

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 19:39:24 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '4uje', asym_id = 'BF', title = 'Regulation of the Mammalian Elongation Cycle by ...ng: A Eukaryotic-Specific Ribosome Rearrangement.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='4uje', asym_id='BF', title='Regulation of the Mammalian Elongation Cycle by ...ng: A Eukaryotic-Specific Ribosome Rearrangement.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003723,0003735,0006412,0015935', uniprot = '', pdbid = '4uje', asym_id = 'BF'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0006412,0015935', uniprot='', pdbid='4uje', asym_id='BF')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>