Structure of PDB 4v7p Chain BE

Receptor sequence

>4v7pBE (length=202) Species: 262724 (Thermus thermophilus HB27)

MYQIPVLSPSGRRELAADLPAEINPHLLWEVVRWQLAKRRRGTASTKTRG
EVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKV
RKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVL
LVTGNELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNR
IG

3D structure

• PDB: 4v7p Recognition of the amber UAG stop codon by release factor RF1.
• Chain: BE
• Resolution: 3.62 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BE	H31 W34 R38 Q40 L41 R44 R45 R46 T48 A49 S50 T51 K52 T53 R54 V57 A58 Y59 S60 R62 K63 Q67 H69 G71 R72 A73 R74 H75 P81 I82 F83 V84 G85 V89 F90 P92 R95 Y99 T100 L101 P102 K103 K104 R106 G134 K135 T136 K137 R165 R168 N169 P171 E179 G180 N182 Y184 R205	H26 W29 R33 Q35 L36 R39 R40 R41 T43 A44 S45 T46 K47 T48 R49 V52 A53 Y54 S55 R57 K58 Q62 H64 G66 R67 A68 R69 H70 P76 I77 F78 V79 G80 V84 F85 P87 R90 Y94 T95 L96 P97 K98 K99 R101 G129 K130 T131 K132 R160 R163 N164 P166 E174 G175 N177 Y179 R200

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v7p, PDBe:4v7p, PDBj:4v7p
• PDBsum: 4v7p
• PubMed: 20588254
• UniProt: Q72I05|RL4_THET2 Large ribosomal subunit protein uL4 (Gene Name=rplD)