Structure of PDB 8q87 Chain BD

Receptor sequence

>8q87BD (length=296) Species: 9031 (Gallus gallus) [Search protein sequence]

GFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRM
IVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCT
GLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTCYLDAGLA
RTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG
QNVADYMRYLMEEDEDAYKKQFSQYIKNNITPDGMEEMYKKAHAAIRDNP
VHEKKPKREVKKKRVNSTKMSLAQKKDRVAQKKASFLRAQERAADS

3D structure

PDB

8q87 Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells

Chain

Resolution

2.4 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BD	F3 K5 V6 K8 K10 A11 Y12 K14 R15 Y16 Q17 K19 R23 T28 Y31 R35 L36 K43 Y44 T46 K48 F113 L115 P139 G140 F142 Y145 L146 L150 R152 T153 F160 P174 S176 R179 S272 Q275 D278 R279 Q282 K283 S286 R289 A290	F2 K4 V5 K7 K9 A10 Y11 K13 R14 Y15 Q16 K18 R22 T27 Y30 R34 L35 K42 Y43 T45 K47 F112 L114 P138 G139 F141 Y144 L145 L149 R151 T152 F159 P173 S175 R178 S271 Q274 D277 R278 Q281 K282 S285 R288 A289
BS02	rna	BD	K8 K10 F13 K14 V18 F20 R21 R22 R24 T28 Y30 R33 R50 R54 T56 N57 R58 I61 Q63 I69 E70 G71 D72 M73 I74 Y79 N94 R152 T155 G156 N157 K158 N203 V204 Y207 Q222 F223 S224 Q225 Y226 H253 K255 R259 E260 V261 K264 V266 N267 S268 K270 M271 L273 K276 K277 R279 V280 K284	K7 K9 F12 K13 V17 F19 R20 R21 R23 T27 Y29 R32 R49 R53 T55 N56 R57 I60 Q62 I68 E69 G70 D71 M72 I73 Y78 N93 R151 T154 G155 N156 K157 N202 V203 Y206 Q221 F222 S223 Q224 Y225 H252 K254 R258 E259 V260 K263 V265 N266 S267 K269 M270 L272 K275 K276 R278 V279 K283

External links

PDB	RCSB:8q87, PDBe:8q87, PDBj:8q87
PDBsum	8q87
PubMed
UniProt	P22451\|RL5_CHICK Large ribosomal subunit protein uL18 (Gene Name=RPL5)

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