Structure of PDB 3j9w Chain BD

Receptor sequence

>3j9wBD (length=275) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence]

AIKKYKPTSNGRRGMTTSDFAEITTDKPEKSLLAPLHKKGGRNNQGKLTV
RHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYADGEK
RYILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKG
GQLVRSAGTSAQVLGKEGKYVLVRLNSGEVRMILSACRASIGQVGNEQHE
LINIGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAPIGRKSPMSPWG
KPTLGFKTRKKKNKSDKFIVRRRKN

3D structure

PDB

3j9w Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stalling.

Chain

Resolution

3.9 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BD	R175 E201 L202	R174 E200 L201
BS02	rna	BD	K7 P8 T9 N11 R13 R14 F21 D27 K31 H38 K39 K40 G42 R43 N44 N45 Q46 G47 K48 L49 T50 V51 R52 H53 G55 G56 H58 K59 R60 Q61 Y62 I74 Y83 P85 R87 D98 G99 E100 K101 L146 G149 K150 Q153 L154 V155 R156 S157 A158 G159 T160 Y171 N177 E180 R182 E198 H200 E201 N204 I205 G206 K207 A208 G209 R210 R212 W213 R217 P218 T219 V220 R221 G222 S223 V224 M225 N226 N228 D229 G234 G235 E236 G237 R238 I241 G242 R243 K244 S245 M247 W250 K252 T254 L255 G256 F257 K258 T259 R260 K262 K263 K265 S266 K268	K6 P7 T8 N10 R12 R13 F20 D26 K30 H37 K38 K39 G41 R42 N43 N44 Q45 G46 K47 L48 T49 V50 R51 H52 G54 G55 H57 K58 R59 Q60 Y61 I73 Y82 P84 R86 D97 G98 E99 K100 L145 G148 K149 Q152 L153 V154 R155 S156 A157 G158 T159 Y170 N176 E179 R181 E197 H199 E200 N203 I204 G205 K206 A207 G208 R209 R211 W212 R216 P217 T218 V219 R220 G221 S222 V223 M224 N225 N227 D228 G233 G234 E235 G236 R237 I240 G241 R242 K243 S244 M246 W249 K251 T253 L254 G255 F256 K257 T258 R259 K261 K262 K264 S265 K267

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0016740	transferase activity
GO:0019843	rRNA binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Cellular Component

External links

PDB	RCSB:3j9w, PDBe:3j9w, PDBj:3j9w
PDBsum	3j9w
PubMed	25903689
UniProt	P42919\|RL2_BACSU Large ribosomal subunit protein uL2 (Gene Name=rplB)

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