Structure of PDB 4v9k Chain BC

Receptor sequence
>4v9kBC (length=228) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence]
PKHGKRYRALLEKVDPNKVYTIDEAARLVKELATAKFDETVEVHAKLGID
PRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEII
QKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIG
EIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHK
PEGAKGTFLRSVYVTTTMGPSVRINPHS
3D structure
PDB4v9k Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation.
ChainBC
Resolution3.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna BC R54 S55 R130 P134 R53 S54 R129 P133
BS02 rna BC P2 K3 K6 R7 Y8 R9 K37 F38 D39 T41 E43 H45 K47 I131 R135 K168 T169 H173 S212 Y214 T216 T218 M219 G220 S222 P1 K2 K5 R6 Y7 R8 K36 F37 D38 T40 E42 H44 K46 I130 R134 K167 T168 H172 S211 Y213 T215 T217 M218 G219 S221
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
GO:0006417 regulation of translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4v9k, PDBe:4v9k, PDBj:4v9k
PDBsum4v9k
PubMed23812722
UniProtQ72GV9|RL1_THET2 Large ribosomal subunit protein uL1 (Gene Name=rplA)

[Back to BioLiP]