Structure of PDB 4v4y Chain BC

Receptor sequence
>4v4yBC (length=228) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGID
PRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEII
QKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIG
EIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHK
PEGAKGTFLRSVYVTTTMGPSVRINPHS
3D structure
PDB4v4y Structural basis for messenger RNA movement on the ribosome.
ChainBC
Resolution5.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna BC R52 R53 S54 P133 R52 R53 S54 P133
BS02 rna BC K2 K5 R6 K36 F37 T40 E42 H44 K46 Q71 D166 K167 T168 H172 K205 G206 Y213 T215 T217 M218 G219 S221 K2 K5 R6 K36 F37 T40 E42 H44 K46 Q71 D166 K167 T168 H172 K205 G206 Y213 T215 T217 M218 G219 S221
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
GO:0006417 regulation of translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4v4y, PDBe:4v4y, PDBj:4v4y
PDBsum4v4y
PubMed17051149
UniProtP27150|RL1_THETH Large ribosomal subunit protein uL1 (Gene Name=rplA)

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