Structure of PDB 8q87 Chain BB

Receptor sequence
>8q87BB (length=398) Species: 9031 (Gallus gallus) [Search protein sequence]
SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKA
GMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVQTPRGLRS
FKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEEGKKQLEKDFN
SMKKYCQVIRVMAHTQMRLLPLRQKKSHLMEIQVNGGTVAEKVDWAREKL
EQQVPVSSVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKV
ACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYQIKDGKLIKN
NASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSL
LVQTKRRALEKIDLKFIDTTSKFGHGRFQTAEEKKSFMGPLKKDRIAK
3D structure
PDB8q87 Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
ChainBB
Resolution2.4 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna BB S2 H3 R4 K5 F6 S7 A8 P9 R10 H11 G12 S13 L14 G15 F16 L17 P18 R19 K20 R21 S23 H25 R26 K28 K30 S31 K50 M53 T54 H55 R62 G64 S65 A75 Y92 T95 P96 R97 L99 R100 S101 F102 K103 T104 R116 R117 F118 Y119 K120 N121 H123 K124 S125 K126 K128 A129 F130 K132 Y133 K155 Y156 R161 M163 R174 Q175 K176 K177 M181 E182 T223 K224 G225 K226 G227 Y228 K229 G230 R234 K238 K239 R242 K243 T244 H245 R246 G247 L248 R249 K250 V251 A252 C253 I254 G255 A256 W257 H258 P259 A260 R261 V262 F264 S265 R268 A269 Q271 Y274 H276 R277 T278 E279 I280 N281 G318 H322 G324 K334 C336 V337 V338 T340 K341 K342 R343 L352 R357 R358 S372 K373 F374 G375 H376 K385 M389 L392 K393 K394 R396 S1 H2 R3 K4 F5 S6 A7 P8 R9 H10 G11 S12 L13 G14 F15 L16 P17 R18 K19 R20 S22 H24 R25 K27 K29 S30 K49 M52 T53 H54 R61 G63 S64 A74 Y91 T94 P95 R96 L98 R99 S100 F101 K102 T103 R115 R116 F117 Y118 K119 N120 H122 K123 S124 K125 K127 A128 F129 K131 Y132 K154 Y155 R160 M162 R173 Q174 K175 K176 M180 E181 T222 K223 G224 K225 G226 Y227 K228 G229 R233 K237 K238 R241 K242 T243 H244 R245 G246 L247 R248 K249 V250 A251 C252 I253 G254 A255 W256 H257 P258 A259 R260 V261 F263 S264 R267 A268 Q270 Y273 H275 R276 T277 E278 I279 N280 G317 H321 G323 K333 C335 V336 V337 T339 K340 K341 R342 L351 R356 R357 S371 K372 F373 G374 H375 K384 M388 L391 K392 K393 R395
BS02 MG BB S2 H3 S1 H2
BS03 MG BB L173 Q175 L172 Q174
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