Structure of PDB 6tdu Chain BA

Receptor sequence

>6tduBA (length=526) Species: 3039 (Euglena gracilis)

KQKIGFVHGIDGTIATIAPAASKVTVPYNTVLEIAVSATNIANALVFNLE
KDGSIGVILLDNISEVRSGQDVYATGSLLKIPVGFHMLGKIINPLGKEIP
TGTKLGLVEEMAPNIVSRQPVNYNLLTGYKVIDTLIPVGRGQRELILGDR
QTGKTSIALSTILNQTKVNNEILSKNNVLSVYVSIGQRCSNVARIHRLLT
EYDAMKYCTIVAATAADPAGLQYLAPYAGTTLGEEFRNSGRHILLVYDDL
SKQAVSYRQISLLLRRPPGREAYPGDVFYLHSRLLERSAMMSPQKGSGSL
TSLPIVETLSNDVTAYIVTNVISITDGQIYLDAKLFTGGQRPAVNIGLSV
SRVGSSAQNKAMKKVGGALKMLMGEYRKMAGEQTSGSQNVSPVMIRGARC
LQLFNQKGPSYFMDAIVALYAVTNGYMDDVKLQYSKFYEFLLLNKDLPVL
YGQVNNKYFYMYNKNLNYFIRYFGLNHEILEPELKKYIEIHTNLFLDNYQ
SRMNELKSDEDLVQLKNLLYACKRTV

3D structure

• PDB: 6tdu Structure of a mitochondrial ATP synthase with bound native cardiolipin.
• Chain: BA
• Resolution: 4.32 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	ATP	BA	Q187 T188 G189 K190 T191 S192 R377 Q442 K443	Q151 T152 G153 K154 T155 S156 R341 Q406 K407

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Wed Dec 18 22:54:56 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6tdu', asym_id = 'BA', title = 'Structure of a mitochondrial ATP synthase with bound native cardiolipin.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6tdu', asym_id='BA', title='Structure of a mitochondrial ATP synthase with bound native cardiolipin.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0005524,0015986,0032559,0045261,0046933', uniprot = '', pdbid = '6tdu', asym_id = 'BA'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005524,0015986,0032559,0045261,0046933', uniprot='', pdbid='6tdu', asym_id='BA')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>