Structure of PDB 4v6r Chain B6

Receptor sequence

>4v6rB6 (length=64) Species: 562 (Escherichia coli)

PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVS
KGDLGLVIACLPYA

3D structure

• PDB: 4v6r Structural characterization of mRNA-tRNA translocation intermediates.
• Chain: B6
• Resolution: 11.5 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	B6	P1 K2 I3 K4 T5 V6 R7 G8 K11 R12 K14 T16 K18 H25 A26 N27 R29 H30 I31 L32 K34 K35 T37 K38 R39 R41 H42 R44 P45 K46 M48 K51 L54 G55 I58 A59 Y63	P1 K2 I3 K4 T5 V6 R7 G8 K11 R12 K14 T16 K18 H25 A26 N27 R29 H30 I31 L32 K34 K35 T37 K38 R39 R41 H42 R44 P45 K46 M48 K51 L54 G55 I58 A59 Y63

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v6r, PDBe:4v6r, PDBj:4v6r
• PDBsum: 4v6r
• PubMed: 22467828
• UniProt: P0A7Q1|RL35_ECOLI Large ribosomal subunit protein bL35 (Gene Name=rpmI)