Structure of PDB 4v65 Chain B6

Receptor sequence

>4v65B6 (length=140) Species: 562 (Escherichia coli) [Search protein sequence]

MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDT
GDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERV
IEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVL

3D structure

PDB

4v65 The Structure of the E. coli Ribosome Before and After Accommodation: Implications for Proofreading

Chain

Resolution

9.0 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	B6	K2 T3 A6 K7 R13 R27 T30 E31 R34 R37 H47 D49 Y53 V64 K68 K72 Y74 Y75 H76 H77 T78 G79 H80 I81 G82 K85 Q86 A87 T88 R96 E98 R99 K106 M108 L109 P110 K111 P113 R116 F119 R120 K121 K123 Q135 Q136 P137 Q138	K2 T3 A6 K7 R13 R27 T30 E31 R34 R37 H47 D49 Y53 V64 K68 K72 Y74 Y75 H76 H77 T78 G79 H80 I81 G82 K85 Q86 A87 T88 R96 E98 R99 K106 M108 L109 P110 K111 P113 R116 F119 R120 K121 K123 Q135 Q136 P137 Q138

Gene Ontology

	Molecular Function
GO:0003729	mRNA binding
GO:0003735	structural constituent of ribosome
GO:0008270	zinc ion binding
GO:0048027	mRNA 5'-UTR binding
GO:0070180	large ribosomal subunit rRNA binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0017148	negative regulation of translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:4v65, PDBe:4v65, PDBj:4v65
PDBsum	4v65
PubMed
UniProt	P0AA10\|RL13_ECOLI Large ribosomal subunit protein uL13 (Gene Name=rplM)