Structure of PDB 4v5a Chain B1

Receptor sequence
>4v5aB1 (length=88) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
SGKRPIVANSIQRRGKAKREGGVGKKTTGISKRRQYPNLQKVRVRVAGQE
ITFRVAASHIPKVYELVERAKGLKLEGLSPKEIKKELL
3D structure
PDB4v5a Crystal structure of the ribosome recycling factor bound to the ribosome.
ChainB1
Resolution3.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B1 S8 Q19 R20 K25 G31 K32 K33 T34 T35 I37 K39 R40 R41 Y43 P44 N45 L46 Q47 V49 R50 R52 R61 K69 K78 S1 Q12 R13 K18 G24 K25 K26 T27 T28 I30 K32 R33 R34 Y36 P37 N38 L39 Q40 V42 R43 R45 R54 K62 K71
BS02 MG B1 I90 E93 I83 E86
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

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External links
PDB RCSB:4v5a, PDBe:4v5a, PDBj:4v5a
PDBsum4v5a
PubMed17660830
UniProtP60494|RL28_THET8 Large ribosomal subunit protein bL28 (Gene Name=rpmB)

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