Structure of PDB 9ggq Chain B

Receptor sequence

>9ggqB (length=776) Species: 562 (Escherichia coli) [Search protein sequence]

SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKE
IIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLGVSVVNALSQ
KLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTN
VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEY
LNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDG
GTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP
DPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDA
ARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSA
GGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI
GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVY
IAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGE
ALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTVTR
WVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLD
HEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVK
ESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT
TLMGDAVEPRRAFIEENALKAANIDI

3D structure

PDB

9ggq Structural basis of chiral wrap and T-segment capture by Escherichia coli DNA gyrase

Chain

Resolution

2.6 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	B	K449 R457	K421 R429
BS02	dna	B	N452 H505 R788	N424 H477 R760

External links

PDB	RCSB:9ggq, PDBe:9ggq, PDBj:9ggq
PDBsum	9ggq
PubMed
UniProt	P0AES6\|GYRB_ECOLI DNA gyrase subunit B (Gene Name=gyrB)

[Back to BioLiP]