Structure of PDB 9f1d Chain B

Receptor sequence

>9f1dB (length=293) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMI
VRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTG
LLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLAR
TTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQ
NVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPV
YEKKPKREVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAA

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	B	F3 V4 K5 Y12 K14 R15 Y16 Q17 K19 R23 G26 T28 D29 Y31 R35 L36 Y44 K48 F113 M115 G140 Y145 L150 R152 F160 H175 S176 K178 R179 R268 S272 A274 Q275 D278 R279 Q282 S286 R289	F1 V2 K3 Y10 K12 R13 Y14 Q15 K17 R21 G24 T26 D27 Y29 R33 L34 Y42 K46 F111 M113 G138 Y143 L148 R150 F158 H173 S174 K176 R177 R266 S270 A272 Q273 D276 R277 Q280 S284 R287
BS02	rna	B	K8 K10 F13 K14 Y16 V18 F20 R21 R22 R24 T28 Y30 R33 R50 I52 R54 T56 N57 R58 I61 I69 E70 D72 M73 I74 N94 R152 T155 N157 K158 N203 V204 Y207 K221 Q222 S224 Q225 Y226 Y253 K255 K256 R259 V261 W266 N267 R268 K270 M271 L273 K276 R279 V280 K284	K6 K8 F11 K12 Y14 V16 F18 R19 R20 R22 T26 Y28 R31 R48 I50 R52 T54 N55 R56 I59 I67 E68 D70 M71 I72 N92 R150 T153 N155 K156 N201 V202 Y205 K219 Q220 S222 Q223 Y224 Y251 K253 K254 R257 V259 W264 N265 R266 K268 M269 L271 K274 R277 V278 K282
BS03	GTP	B	K263 K264 R265 N267	K261 K262 R263 N265

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1SZF4

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