Structure of PDB 9f1b Chain B

Receptor sequence

>9f1bB (length=295) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYR
MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYC
TGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGL
ARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIM
GQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIREN
PVYEKKPKREVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAA

3D structure

PDB

9f1b NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.01 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	B	M1 G2 F3 V4 K5 K8 K10 Y12 K14 R15 Y16 Q17 K19 R23 G26 T28 D29 Y31 R35 L36 K43 Y44 K48 F113 M115 P139 G140 Y145 L150 R152 T153 F160 P174 H175 S176 K178 R179 R268 S272 A274 Q275 D278 R279 Q282 S286 R289 A290	M1 G2 F3 V4 K5 K8 K10 Y12 K14 R15 Y16 Q17 K19 R23 G26 T28 D29 Y31 R35 L36 K43 Y44 K48 F113 M115 P139 G140 Y145 L150 R152 T153 F160 P174 H175 S176 K178 R179 R268 S272 A274 Q275 D278 R279 Q282 S286 R289 A290
BS02	rna	B	K8 K10 F13 K14 Y16 V18 F20 R21 R22 R24 T28 Y30 R33 R50 I52 R54 T56 N57 R58 I61 I69 E70 D72 M73 I74 N94 Y95 R152 T155 N157 K158 N203 V204 Y207 K221 Q222 F223 S224 Q225 Y226 Y253 K255 K256 R259 V261 W266 N267 R268 K270 M271 L273 K276 K277 R279 V280 K284	K8 K10 F13 K14 Y16 V18 F20 R21 R22 R24 T28 Y30 R33 R50 I52 R54 T56 N57 R58 I61 I69 E70 D72 M73 I74 N94 Y95 R152 T155 N157 K158 N203 V204 Y207 K221 Q222 F223 S224 Q225 Y226 Y253 K255 K256 R259 V261 W266 N267 R268 K270 M271 L273 K276 K277 R279 V280 K284
BS03	GTP	B	K263 K264 R265 N267	K263 K264 R265 N267

External links

PDB	RCSB:9f1b, PDBe:9f1b, PDBj:9f1b
PDBsum	9f1b
PubMed	39169182
UniProt	G1SZF4

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