Structure of PDB 9bkd Chain B

Receptor sequence

>9bkdB (length=143) Species: 9606 (Homo sapiens) [Search protein sequence]

DIQTERAYQKQPTIFQNKKRKEKLPRYYKNIGLGFKTPKEAIEGTYIDKK
CPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNM
SVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTK

3D structure

PDB

9bkd Human tumor suppressor protein Pdcd4 binds at the mRNA entry channel in the 40S small ribosomal subunit.

Chain

Resolution

2.6 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	B	E7 R8 Q11 P14 T15 F17 Y36 N39 I40 G41 L42 K58 K59 N65 S67 R69 R71 K79 K81 M82 Q83 T85 V87 R89 R90 Y92 H94 K98 K104 R105 H106 K107 N108 E130 R132 P133 L134 S135 K136 T137 R139 F140 K152	E5 R6 Q9 P12 T13 F15 Y27 N30 I31 G32 L33 K49 K50 N56 S58 R60 R62 K70 K72 M73 Q74 T76 V78 R80 R81 Y83 H85 K89 K95 R96 H97 K98 N99 E121 R123 P124 L125 S126 K127 T128 R130 F131 K143

External links

PDB	RCSB:9bkd, PDBe:9bkd, PDBj:9bkd
PDBsum	9bkd
PubMed	39117603
UniProt	P62280\|RS11_HUMAN Small ribosomal subunit protein uS17 (Gene Name=RPS11)