Structure of PDB 9bdv Chain B

Receptor sequence
>9bdvB (length=274) Species: 10090 (Mus musculus) [Search protein sequence]
MPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYT
GPGTVRISLVTKDPPHRPHPHELVGKDCRDGYYEADLCPDRSIHSFQNLG
IQCVKKRDLEQAISQRIQTNNNPFHVPIEEQRGDYDLNAVRLCFQVTVRD
PAGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCD
KVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVR
VSMQLRRPSDRELSEPMEFQYLPD
3D structure
PDB9bdv Transient interactions modulate affinity of NF-kappaB transcription factors for DNA
ChainB
Resolution1.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B Y36 C38 K122 K123 R187 Q220 K221 Q247 Y19 C21 K105 K106 R170 Q203 K204 Q230
BS02 dna B R33 R35 S42 R16 R18 S25
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003700 DNA-binding transcription factor activity
Biological Process
GO:0006355 regulation of DNA-templated transcription
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:9bdv, PDBe:9bdv, PDBj:9bdv
PDBsum9bdv
PubMed38805268
UniProtQ04207|TF65_MOUSE Transcription factor p65 (Gene Name=Rela)

[Back to BioLiP]