Structure of PDB 9bdu Chain B

Receptor sequence
>9bduB (length=275) Species: 10090 (Mus musculus) [Search protein sequence]
MPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYT
GPGTVRISLVTKDPPHRPHPHELVGKDCRDGYYEADLCPDRSIHSFQNLG
IQCVKKRDLEQAISQRIQTNNNPFHVPIEEQRGDYDLNAVRLCFQVTVRD
PAGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCD
KVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVR
VSMQLRRPSDRELSEPMEFQYLPDT
3D structure
PDB9bdu Transient interactions modulate affinity of NF-kappaB transcription factors for DNA
ChainB
Resolution2.03 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B Y36 C38 E39 K56 K122 K123 R187 P189 Q220 K221 R246 Q247 Y19 C21 E22 K39 K105 K106 R170 P172 Q203 K204 R229 Q230
BS02 dna B R33 R35 G44 R16 R18 G27
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003700 DNA-binding transcription factor activity
Biological Process
GO:0006355 regulation of DNA-templated transcription
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:9bdu, PDBe:9bdu, PDBj:9bdu
PDBsum9bdu
PubMed38805268
UniProtQ04207|TF65_MOUSE Transcription factor p65 (Gene Name=Rela)

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