Structure of PDB 8yk3 Chain B

Receptor sequence
>8yk3B (length=619) Species: 398514 (Bifidobacterium bifidum JCM 1254) [Search protein sequence]
GDVVSVADYGAAADSGEDSAPAIIKAVDKAKELAAEGKNVTIAFPKGRYD
IYPDKAERRTLYVSNTVGTNSSYKDKKIGILLEDTKNITVDGQGSDFVFH
GKMTTFAAINSRNVTFKNFSVDFQVPTVIDLTVEKVDAGAKTATVYVPEE
YNYRLSGSNIEWYSDSSPYTGATYWTASNALPYVQLYDTKTGLTVRGDVW
TNPIFQNVTGITDAGNHRLVFSYSSMSDKLANATGISYQMRQTTRDHPGV
FLWKDKDVTLKGIDFRFLHGFGVVGQSTDTITMDGLHFGTGEGTGRSTAG
YADFVQMSGCKGVITVANSSFSNPHDDPINVHGTFLQVVEKISDTKIKVR
YMHNETAGFPSFFVGDQVEFMTKGDMLPVSDSVRTVTAVDGPDGQGGDMG
AGSGSLTDIVLTLDSAIPSAVAVNSHVVENITYTPEVNIHDNVFKETPTR
GILVTTRKKVTIENNLFDGMGMAGIYISNDAQSWYESGPTRDVTIRGNTF
RRSGSDAILVEPTNPTVSTTDTVHKNMTIEGNTFYVNGNRVLNAKSVSDL
TFRDNKIYRENPQVSGSRLFRLNGCKQVVFGGNTYDVGVKAGIDLANMGA
SEVNVSDDSAKVGADGLVP
3D structure
PDB8yk3 Crystal Structure of Bifidobacterium bifidum Glycoside Hydrolase Family 110 alpha-Galactosidase Specific for Blood Group B Antigen
ChainB
Resolution3.5 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GLA B N90 R270 D351 R475 W509 E511 N65 R245 D326 R450 W484 E486
External links