Structure of PDB 8y6c Chain B

Receptor sequence

>8y6cB (length=310) Species: 142786 (Norovirus) [Search protein sequence]

SKPFTLPILTLGELTNSRFPLPIDVLYTNPNESAIVQCQNGRCTLDGELQ
GTTQLLPTGICAFRGKVTQQVQDEHRGTHWNMTVTNLNGTPFDPTEDVPA
PLGTPDFSGQIYGVISQRNTNTNLPANRAHEAVIATYSPKFTPKLGNIQF
STWETQDVSSGQPTKFTPVGLASVDANSHFDQWTLPSYSGALTLNMNLAP
SVAPVFPGECLLFFRSFIPLKGGYGNPAIDCLMPQEWVQHLYQESAPSLS
DVALVRYVNPETGRTLFEAKLHRNGFLTVARNSAGPVVAPTNGYFRFDSW
VNQFYTLAPM

3D structure

PDB

8y6c Norovirus GII.10 P domain and 2'-FL (powder)

Chain

Resolution

1.47 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	GLC	B	S401 D403 G451	S173 D175 G223
BS02	FUC	B	G451 Y452	G223 Y224
BS03	FUC	B	A354 N355 R356 D385	A126 N127 R128 D157

External links

PDB	RCSB:8y6c, PDBe:8y6c, PDBj:8y6c
PDBsum	8y6c
PubMed
UniProt	Q5F4T5

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