Structure of PDB 8xlp Chain B

Receptor sequence
>8xlpB (length=503) Species: 52970 (Rhodomonas salina) [Search protein sequence]
GLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPV
LNPMWRQGMFVMPFMARIGVTDSWGGWSITGESVANPGFWSFEGVALAHI
GLSGLLFLAAVWHWVYWDLELFRDPRTGNPALDLPKIFGIHLLLSGVLCF
GFGAFHVTGAWGPGIWVSDAYGITGKVQPVAPAWGPEGFNPFNPSGVASH
HIAAGILGFAAGIFHIAVRPPQRLYRALRMGNIETVLSSSIAAVFWSAFI
TTGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGLSLSEA
WSRIPDKLAFYDYVGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFQDKEG
RELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTTSF
YGGKLNGQVFTDAPTVKKYARKAQLGEVMEFDRTTLESDGVFRSSPRGWY
TFGHANFALLFFLGHLWHGSRTLFRDVFSGIGAEVTEQVEFGAFQKLGDR
STK
3D structure
PDB8xlp Structure of inactive Photosystem II associated with CAC antenna from Rhodomonas Salina
ChainB
Resolution2.57 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CLA B W185 G186 P187 F190 W184 G185 P186 F189
BS02 CLA B G189 F190 H201 L208 W247 F250 I251 G188 F189 H200 L207 W246 F249 I250
BS03 CLA B R68 I69 C150 F153 V198 H201 H202 W247 S248 T252 T262 R67 I68 C149 F152 V197 H200 H201 W246 S247 T251 T261
BS04 CLA B W33 F61 F65 R68 L149 S248 A249 T252 Y451 H455 F458 F462 W32 F60 F64 R67 L148 S247 A248 T251 Y450 H454 F457 F461
BS05 CLA B V30 W33 A34 V62 M66 H100 L103 A205 G209 V29 W32 A33 V61 M65 H99 L102 A204 G208
BS06 CLA B I69 W91 A99 H100 L103 L106 G152 F153 H157 W162 P164 I68 W90 A98 H99 L102 L105 G151 F152 H156 W161 P163
BS07 CLA B W33 M37 Y40 G59 F61 A327 W450 Y451 W32 M36 Y39 G58 F60 A326 W449 Y450
BS08 CLA B S239 A243 F246 W247 F463 H466 L467 L474 S238 A242 F245 W246 F462 H465 L466 L473
BS09 CLA B F139 A212 F215 H216 P221 P222 L225 L229 F138 A211 F214 H215 P220 P221 L224 L228
BS10 CLA B P136 F139 H142 V237 S240 S241 P135 F138 H141 V236 S239 S240
BS11 CLA B W5 Y6 R7 V8 H9 T10 L238 I242 F462 G465 W468 H469 R472 W4 Y5 R6 V7 H8 T9 L237 I241 F461 G464 W467 H468 R471
BS12 CLA B H9 L19 H23 H26 T27 I234 V237 L238 S241 H8 L18 H22 H25 T26 I233 V236 L237 S240
BS13 CLA B H9 H26 V30 L461 F462 H8 H25 V29 L460 F461
BS14 CLA B V8 H9 M25 L29 W115 V7 H8 M24 L28 W114
BS15 CLA B I20 H23 L24 L133 I138 I141 H142 L145 I19 H22 L23 L132 I137 I140 H141 L144
BS16 CLA B I20 L24 A110 W113 H114 I19 L23 A109 W112 H113
BS17 WVN B M25 L29 F108 A111 W115 M24 L28 F107 A110 W114
BS18 WVN B L29 G32 W33 I101 S104 G105 L28 G31 W32 I100 S103 G104
BS19 WVN B L106 L109 A110 V112 W113 L105 L108 A109 V111 W112
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
Biological Process
GO:0015979 photosynthesis
Cellular Component
GO:0009507 chloroplast
GO:0009523 photosystem II
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8xlp, PDBe:8xlp, PDBj:8xlp
PDBsum8xlp
PubMed
UniProtA6MW31

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