Structure of PDB 8x41 Chain B

Receptor sequence
>8x41B (length=269) Species: 70601 (Pyrococcus horikoshii OT3) [Search protein sequence]
KMRDRLFFLLSKYGIRPRDSIGQHFLIIEDVIEKAIETANVNENDVILEV
GPGLGFLTDELAKRAKKVYTIEIDQKIIEILKKEYSWNNVKIIQGDAVRV
EWPKFNKVVSNIPYKISSPFTFKLLKTDFERAVVMYQLEFALRMVAKPGS
RNYSRLSLMAQALGNVEIVMKIGKGAFYPRPKVDSALVLIEPRKDKIVLN
ENLVKALFQHRRKTVPRALKDSIHMLGVSKDEIRGIINNVPHSNKRVFQL
YPEEVKDIEEYLKKHGIIS
3D structure
PDB8x41 Structural and functional characterization of archaeal DIMT1 unveils distinct protein dynamics essential for efficient catalysis.
ChainB
Resolution2.35 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MTA B I42 G43 Q44 H45 G72 G74 I92 E93 I94 D117 P134 I21 G22 Q23 H24 G51 G53 I71 E72 I73 D96 P113
BS02 ADN B S243 I244 H245 L247 I288 S222 I223 H224 L226 I267
BS03 ZN B D40 H45 D19 H24
BS04 SO3 B D95 K97 D74 K76
BS05 SO3 B H263 E275 H242 E254
External links
PDB RCSB:8x41, PDBe:8x41, PDBj:8x41
PDBsum8x41
PubMed39146930
UniProtO59487|RSMA_PYRHO Probable ribosomal RNA small subunit methyltransferase A (Gene Name=rsmA)

[Back to BioLiP]