Structure of PDB 8wmy Chain B

Receptor sequence
>8wmyB (length=194) Species: 1279 (Staphylococcus) [Search protein sequence]
TYEDYLPYSRTELLAKIAEQMSPKRFKHVLGVEKAALSLAECYGCNPDKA
GLAALLHDYAKECPDQVFLDLIDKYQLSPELAKWNNNVWHGMVGIYKIQE
DLGLKDKDILRAIEIHTVGAAEMTLLDKVLYVADYIEEGRIFPLVDDARK
IAKLDLNQAVAYETVNTVAYLASKAQPIFPQTLDTYNAFCSYLK
3D structure
PDB8wmy Molecular Mechanism of Ap4A Hydrolysis by YqeK of Staphylococcus pyogenes.
ChainB
Resolution1.91 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.1.41: bis(5'-nucleosyl)-tetraphosphatase (symmetrical).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP B H29 D59 K62 N88 H91 H117 T118 D135 L172 P178 F180 T183 H28 D58 K61 N87 H90 H116 T117 D134 L171 P177 F179 T182
BS02 MG B D59 H91 H117 D58 H90 H116
BS03 MG B H29 H58 D59 D135 H28 H57 D58 D134
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8wmy, PDBe:8wmy, PDBj:8wmy
PDBsum8wmy
PubMed
UniProtA0A4U7IGH6

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