Structure of PDB 8w7f Chain B

Receptor sequence
>8w7fB (length=412) Species: 7227 (Drosophila melanogaster) [Search protein sequence]
GDYDLVVVGGGIVGAASAREIVLRHPSLKVAVLEKECKLAKHQSGHNSGV
IHAGIYYKPGTLKARLCVEGMHLAYAYLDEKKIPYKKTGKLIVATDEKEV
KLLKDLEKRGIANNVPDLRMIEGSEIQEIEPYCQGVMALHSPHTGIVDWG
LVTEHYGQDFKQCGGDIYLDFNVSKFTETKTDYPVTIHGAKPGQTVRTKN
VLTCGGLQSDLLAEKTGCPRDPRIVPFRGEYLLLTKEKQHMVKGNIYPVP
DPRFPFLGVHFTPRMDGSIWLGPNAVLALKREGYTWGDINLFELFDALRY
PGFVKMASKYIGFGLSEMSKSWFINLQIKALQKYIPDITEYDIQRGPAGV
RAQAMDLDGNLVDDFVFDRGQGSGALAKRVLHCRNAPSPGATSSLAIAKM
IADKIENEFSIG
3D structure
PDB8w7f Structure and biochemical characterization of L-2-hydroxyglutarate dehydrogenase and its role in the pathogenesis of L-2-hydroxyglutaric aciduria
ChainB
Resolution2.299 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.1.99.2: L-2-hydroxyglutarate dehydrogenase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FAD B G51 I52 V53 E74 K75 H82 Q83 S84 H86 N87 S88 V90 H92 V213 G247 G248 Q250 Y273 V392 R393 P431 G432 A433 T434 G11 I12 V13 E34 K35 H42 Q43 S44 H46 N47 S48 V50 H52 V173 G205 G206 Q208 Y231 V350 R351 P389 G390 A391 T392
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003973 (S)-2-hydroxy-acid oxidase activity
GO:0016491 oxidoreductase activity
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
GO:0047545 2-hydroxyglutarate dehydrogenase activity
GO:0061758 2-hydroxyglutarate dehydrogenase activity, forward reaction
Cellular Component
GO:0005739 mitochondrion

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Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:8w7f, PDBe:8w7f, PDBj:8w7f
PDBsum8w7f
PubMed37995940
UniProtQ9VJ28

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