Structure of PDB 8vdd Chain B

Receptor sequence

>8vddB (length=177) Species: 9606 (Homo sapiens) [Search protein sequence]

PEDFVYQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPL
GPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISP
LLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEM
TPQRGDVYTCHVEHPSLQNPIIVEWRA

3D structure

PDB

8vdd A structural basis of T cell cross-reactivity to a native and spliced self-antigens presented by HLA-DQ8

Chain

Resolution

2.6 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	B	F11 Y30 Y37 A57 Y60 W61 V78 L85 R88	F8 Y27 Y34 A54 Y57 W58 V75 L82 R85

External links

PDB	RCSB:8vdd, PDBe:8vdd, PDBj:8vdd
PDBsum	8vdd
PubMed	39074636
UniProt	O19707

[Back to BioLiP]