Structure of PDB 8vd2 Chain B

Receptor sequence

>8vd2B (length=177) Species: 9606 (Homo sapiens) [Search protein sequence]

SPEDFVYQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTP
LGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTIS
PSRNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILV
MLEMTPDVYTCHVEHPSLQNPIIVEWR

3D structure

PDB

8vd2 A structural basis of T cell cross-reactivity to a native and spliced self-antigens presented by HLA-DQ8

Chain

Resolution

2.9 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	B	F11 Y30 Y37 A57 Y60 W61 E74 V78 N82	F9 Y28 Y35 A55 Y58 W59 E72 V76 N80

External links

PDB	RCSB:8vd2, PDBe:8vd2, PDBj:8vd2
PDBsum	8vd2
PubMed	39074636
UniProt	O19707

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