Structure of PDB 8uci Chain B

Receptor sequence
>8uciB (length=380) Species: 1343739 (Palaeococcus pacificus DY20341) [Search protein sequence]
MVSSYFKGILLNLGLDEERIEVLENKGGIVEDEFEGMRYLRLKDSARSLR
RGTVVFDEHNIILGFPHIKRVVQLENGIRRAFKRKPFYVEEKVDGYNVRV
AKIGEKILVFTRGGFVCPFTTERIEDFITLDFFKDYPNMVLCGEMAGPES
PYLVEGPPYVKEDIQFFLFDIQEKKTGRSLPVEERLKLAEEYGIPSVEVF
GLYDLSRIDELHALIDRLTKEKREGIVMKSPDMKKIVGYVTPYANINDIK
IGARIFFDLPHGYFMQRIKRLAFYLAERKIRGEEFDEYARALGKVLLEPF
VESIWDISSGDDEIAELFTVRVKKLETAHKMVTHFERLRLKIHIDDIEVL
DNGYWRITFKRVYPDATKEMRELWNGHAFV
3D structure
PDB8uci Characterisation and Engineering of a Thermophilic RNA Ligase from Palaeococcus pacificus
ChainB
Resolution2.14 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.5.1.3: RNA ligase (ATP).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP B I68 R70 K92 V93 N97 E144 F169 K229 I68 R70 K92 V93 N97 E144 F169 K229
BS02 MG B D94 E155 D248 D94 E155 D248
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8uci, PDBe:8uci, PDBj:8uci
PDBsum8uci
PubMed38421610
UniProtA0A075LQ94

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