Structure of PDB 8ucg Chain B

Receptor sequence
>8ucgB (length=379) Species: 1343739 (Palaeococcus pacificus DY20341) [Search protein sequence]
MVSSYFKGILLNLDEERIEVLENKGGIVEDEFEGMRYLRLKDSARSLRRG
TVVFDEHNIILGFPHIKRVVQLENGIRRAFKRKPFYVEEAVDGYNVRVAK
IGEKILVFTRGGFVCPFTTERIEDFITLDFFKDYPNMVLCGEMAGPESPY
LVEGPPYVKEDIQFFLFDIQEKKTGRSLPVEERLKLAEEYGIPSVEVFGL
YDLSRIDELHALIDRLTKEKREGIVMKSPDMKKIVKYVTPYANINDIKIG
ARIFFDLPHGYFMQRIKRLAFYLAERKIRGEEFDEYARALGKVLLEPFVE
SIWDISSGDDEIAELFTVRVKKLETAHKMVTHFERLRLKIHIDDIEVLDN
GYWRITFKRVYPDATKEMRELWNGHAFVD
3D structure
PDB8ucg Characterisation and Engineering of a Thermophilic RNA Ligase from Palaeococcus pacificus
ChainB
Resolution1.86 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.5.1.3: RNA ligase (ATP).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG B D94 D248 D92 D246
BS02 MG B P148 V154 P146 V152
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8ucg, PDBe:8ucg, PDBj:8ucg
PDBsum8ucg
PubMed38421610
UniProtA0A075LQ94

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