Structure of PDB 8u9r Chain B

Receptor sequence
>8u9rB (length=1060) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICISFGK
IYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVVFIGRLPIMLRS
KNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVF
KKAAPSPISHVAEIRSALEKSRFISTLQVKLYGREGSSARTIKATLPYIK
QDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDR
ETALDFIGRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCA
LDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQLAINAK
TITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP
IKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFL
SEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD
INPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDLKVRKGHIAKLMATEY
TWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAKRIRVSHHATTFTHCE
IHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTM
ANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMN
QSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRMKHGTYDKLDDDG
LIAPGVRVSGEDVIIGKTTKRDASTPLRSTENGIVDQVLVTTNQDGLKFV
KVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINP
HAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGY
QSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVL
TRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICG
ICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITP
RLYTDRSRDF
3D structure
PDB8u9r Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser.
ChainB
Resolution3.34 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B Q776 K979 K987 H1097 Q634 K815 K823 H933
BS02 dna B T791 R857 G1121 R1122 L1128 R1129 M1133 T649 R715 G957 R958 L964 R965 M969
BS03 ATP B R766 K987 R1020 R624 K823 R856
BS04 ZN B C1163 C1166 C1182 C1185 C999 C1002 C1018 C1021
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