Structure of PDB 8sz2 Chain B

Receptor sequence
>8sz2B (length=238) Species: 1038927 (Escherichia coli O104:H4) [Search protein sequence]
MREFTIDFSTQQSYVSSLNSIRTEISTPLEHISQGTTSVSVINHTPPGSY
FAVDIRGLDVYARFDHLRLIIEQNNLAVAGFVNTATNTFYRFSDFTHISV
PGVTTVSMTTDSSYTTLQRVAALERSGMQISRHSLVSSYLALMEFSGNTM
TRDASRAVLRFVTVTAEALRFRQIQREFRQALSPVYTMTPGDVDLTLNWG
RISNVLPEYRGEDGVRVGRISFNNISAILGTVAVILNC
3D structure
PDB8sz2 Structure of Shiga toxin 2 A1 subunit with peptides that bind at the ribosome binding site and inhibit activity
ChainB
Resolution2.01 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.2.2.22: rRNA N-glycosylase.
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 peptide B Q11 V14 Q33 R172 Q175 R176 R179 G233 Q12 V15 Q34 R172 Q175 R176 R179 G230
External links
PDB RCSB:8sz2, PDBe:8sz2, PDBj:8sz2
PDBsum8sz2
PubMed
UniProtP09385|STXA_BP933 Shiga-like toxin 2 subunit A (Gene Name=stxA2)

[Back to BioLiP]