Structure of PDB 8sp3 Chain B

Receptor sequence
>8sp3B (length=469) Species: 429344 (Maribacter polysiphoniae) [Search protein sequence]
MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGL
KIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNED
IGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKY
CRPNSVLPAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAF
GLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKV
EKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKAL
LSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTI
SKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVP
NPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGE
ILTASTDIKTPPLAFKYYI
3D structure
PDB8sp3 Oligomerization-mediated activation of a short prokaryotic Argonaute.
ChainB
Resolution3.52 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B Y148 H207 I223 R225 T228 F245 H251 T255 N468 R481 I507 Y148 H169 I185 R187 T190 F207 H213 T217 N430 R443 I469
BS02 dna B S67 R72 R152 N154 K247 K286 Y328 K362 T363 R364 S67 R72 R152 N154 K209 K248 Y290 K324 T325 R326
BS03 MG B N468 I507 N430 I469
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding

View graph for
Molecular Function
External links
PDB RCSB:8sp3, PDBe:8sp3, PDBj:8sp3
PDBsum8sp3
PubMed37494956
UniProtA0A316E3U6

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