Structure of PDB 8sly Chain B

Receptor sequence
>8slyB (length=591) Species: 10116 (Rattus norvegicus) [Search protein sequence]
FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA
VLNLACIMPLLQIDKDSGNPKLLVNAQCTDEFYQGHSALHIAIEKRSLQC
VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL
LENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA
RLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGPYQPLSRK
FTEWCYGPVRVSLYDLSSVDSWEKNSVLEIIAFHCKSPNRHRMVVLEPLN
KLLQEKWDRLVSRFFFNFACYLVYMFIFTVVAYHQPSMLLLGHILILLGG
IYLLLGQLWYFWRRRLFIWISFMDSYFEILFLLQALLTVLSQVLRFMETE
WYLPLLVLSLVLGWLNLLYYTRGFQHTGIYSVMIQKVILRDLLRFLLVYL
VFLFGFAVALVSLSRRSILDASLELFKFTIGMGELAFQEQLRFRGVVLLL
LLAYVLLTYVLLLNMLIALMSETVNHVADNSWSIWKLQKAISVLEMENGY
WWCRRKKHREGRLLKVGPDERWCFRVEEVNWAAWTLSEDPS
3D structure
PDB8sly Cannabidiol sensitizes TRPV2 channels to activation by 2-APB.
ChainB
Resolution3.32 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 P0T B L537 F540 L541 Y544 L442 F445 L446 Y449
BS02 P0T B M468 I524 Q530 I533 L534 M373 I429 Q435 I438 L439
BS03 P0T B L631 Y634 V635 L506 Y509 V510
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
GO:0005261 monoatomic cation channel activity
GO:0005262 calcium channel activity
GO:0005515 protein binding
GO:0042802 identical protein binding
Biological Process
GO:0006811 monoatomic ion transport
GO:0006915 apoptotic process
GO:0008285 negative regulation of cell population proliferation
GO:0009266 response to temperature stimulus
GO:0045773 positive regulation of axon extension
GO:0055085 transmembrane transport
GO:0070588 calcium ion transmembrane transport
GO:0090280 positive regulation of calcium ion import
GO:0120162 positive regulation of cold-induced thermogenesis
Cellular Component
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0009986 cell surface
GO:0012505 endomembrane system
GO:0016020 membrane
GO:0030027 lamellipodium
GO:0030424 axon
GO:0032584 growth cone membrane
GO:0042470 melanosome
GO:0044295 axonal growth cone
GO:0044297 cell body

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8sly, PDBe:8sly, PDBj:8sly
PDBsum8sly
PubMed37199723
UniProtQ9WUD2|TRPV2_RAT Transient receptor potential cation channel subfamily V member 2 (Gene Name=Trpv2)

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