Structure of PDB 8s8j Chain B

Receptor sequence

>8s8jB (length=225) Species: 284590 (Kluyveromyces lactis NRRL Y-1140) [Search protein sequence]

AVGKNKRLSKRVVDPFTRKEWYDIKAPSTFENRNVGKTLVNKSVGLKNAS
DSLKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTD
KLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRTSYAQS
SHIRQIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQ
NVHIRKVKLLKQPKFDLGSLLSLHG

3D structure

PDB

8s8j Structural basis of AUC codon discrimination during translation initiation in yeast.

Chain

Resolution

4.7 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	B	A2 K5 L9 S10 K27 R64 R115 K116 W117 L120 N124 R136 F138 Q146 N148 Q149 V150 K151 R152 Y155 Q157 S158 S159 H160 R165 K202 D203 I204 F205 K214	A1 K4 L8 S9 K19 R56 R107 K108 W109 L112 N116 R128 F130 Q138 N140 Q141 V142 K143 R144 Y147 Q149 S150 S151 H152 R157 K194 D195 I196 F197 K206

External links

PDB	RCSB:8s8j, PDBe:8s8j, PDBj:8s8j
PDBsum	8s8j
PubMed	39193907
UniProt	Q6CWD0\|RS3A_KLULA Small ribosomal subunit protein eS1 (Gene Name=RPS1)

[Back to BioLiP]