Structure of PDB 8s8g Chain B

Receptor sequence
>8s8gB (length=225) Species: 284590 (Kluyveromyces lactis NRRL Y-1140) [Search protein sequence]
AVGKNKRLSKRVVDPFTRKEWYDIKAPSTFENRNVGKTLVNKSVGLKNAS
DSLKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTD
KLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRTSYAQS
SHIRQIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQ
NVHIRKVKLLKQPKFDLGSLLSLHG
3D structure
PDB8s8g Structural basis of AUC codon discrimination during translation initiation in yeast.
ChainB
Resolution4.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B A2 V3 G4 L9 S10 P23 R115 K116 W117 L120 N124 R136 F138 N148 Q149 V150 K151 Y155 Q157 S158 S159 R165 K202 D203 I204 K214 A1 V2 G3 L8 S9 P15 R107 K108 W109 L112 N116 R128 F130 N140 Q141 V142 K143 Y147 Q149 S150 S151 R157 K194 D195 I196 K206
External links
PDB RCSB:8s8g, PDBe:8s8g, PDBj:8s8g
PDBsum8s8g
PubMed39193907
UniProtQ6CWD0|RS3A_KLULA Small ribosomal subunit protein eS1 (Gene Name=RPS1)

[Back to BioLiP]