Structure of PDB 8qnd Chain B

Receptor sequence
>8qndB (length=296) Species: 1598 (Limosilactobacillus reuteri) [Search protein sequence]
HTTKIIMDTDPGIDDAAALTMAINDPSLDLKLVTTVAGNVTADKTTANAL
KIIHFFGKDIPVAAGAKQPLIKPFEDAARIHGESGMPGYDFGDDYGKPLD
KTAVEALHDAIMAEDEVILVPTGSYTNIALLFSEYPEVKSHIKQIVAMGG
SFSGGNMTSAAEFNVFTDPDAAKIMYNAGVPIVTVGLDVTLKALLTADTI
EKLGSLNKTGEMLHGLITHYGRPMHDVNTIFYLLHPEAFTTKDMWVDIQT
DGPAIGATVGDIRAAYHDGKTNAKVCLDIDAEYFNKWFLEEVSKMK
3D structure
PDB8qnd Cloning of Ribonucleoside Hydrolase C (RihC) from Limosilactobacillus reuteri LR1 and Study of Its Structural and Functional Characteristics
ChainB
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.2.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B D16 D21 T128 D238 D10 D15 T122 D226
BS02 CA B E111 E140 E105 E134
Gene Ontology
Molecular Function
GO:0008477 purine nucleosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0046872 metal ion binding
Biological Process
GO:0006139 nucleobase-containing compound metabolic process
GO:0006152 purine nucleoside catabolic process
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8qnd, PDBe:8qnd, PDBj:8qnd
PDBsum8qnd
PubMed38203708
UniProtA5JJT3

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