Structure of PDB 8pzq Chain B

Receptor sequence
>8pzqB (length=470) Species: 11320 (Influenza A virus) [Search protein sequence]
NATEIRASVGKMIDGIGRFYIQMCTELKLSDYEGRLIQNSLTIERMVLSA
FDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWRRELILYDKEEIRRIW
RQANNGDDATAGLTHMMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGS
TLPRRSGAAGAAVKGVGTMVMELIRMIKRGINDRNFWRGENGRRTRIAYE
RMCNILKGKFQTAAQRTMVDQVRESRNPGNAEFEDLIFLARSALILRGSV
AHKSCLPACVYGSAVASGYDFEREGYSLVGIDPFRLLQNSQVYSLIRPNE
NPAHKSQLVWMACHSAAFEDLRVSSFIRGTKVVPRGKLSTRGVQIASNEN
METMESSTLELRSRYWAIRTRSGGNTNQQRASSGQISIQPTFSVQRNLPF
DRPTIMAAFTGNTEGRTSDMRTEIIRLMESARPEDVSFQGRGVFELSDEK
ATSPIVPSFDMSNEGSYFFG
3D structure
PDB8pzq Cryo-EM structure of influenza helical nucleocapsid reveals NP-NP and NP-RNA interactions as a model for the genome encapsidation.
ChainB
Resolution5.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna B I25 I388 T390 R391 S392 Q398 R461 I5 I368 T370 R371 S372 Q378 R441
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005198 structural molecule activity
Biological Process
GO:0046718 symbiont entry into host cell
GO:0075732 viral penetration into host nucleus
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0042025 host cell nucleus
GO:0043657 host cell
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8pzq, PDBe:8pzq, PDBj:8pzq
PDBsum8pzq
PubMed38100595
UniProtA0A2Z5UJ33

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