Structure of PDB 8pde Chain B

Receptor sequence
>8pdeB (length=92) Species: 9606 (Homo sapiens) [Search protein sequence]
GRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHS
NKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGF
3D structure
PDB8pde Folding of Class IIa HDAC Derived Peptides into alpha-helices Upon Binding to Myocyte Enhancer Factor-2 in Complex with DNA.
ChainB
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B D63 Y69 T70 Y72 N73 D62 Y68 T69 Y71 N72
BS02 dna B G2 R3 K4 I6 K23 R24 K30 G1 R2 K3 I5 K22 R23 K29
BS03 dna B G2 R3 K5 K31 G1 R2 K4 K30
Gene Ontology
Molecular Function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003677 DNA binding
GO:0046983 protein dimerization activity
Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II

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Molecular Function
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Biological Process
External links
PDB RCSB:8pde, PDBe:8pde, PDBj:8pde
PDBsum8pde
PubMed38492719
UniProtQ05BX2

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