Structure of PDB 8oyb Chain B

Receptor sequence

>8oybB (length=427) Species: 192952 (Methanosarcina mazei Go1) [Search protein sequence]

MNPKRIRALKSGKQGDGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVV
VVFCLTDEFLEAGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKIS
RFVKDYNAGTLVTDFSPLRIKNQWIEKVISGISIPFFEVDAHNVVPCWEA
SQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTDPLFEPWHFEPGEKA
AKKVMESFIADRLDSYGALRNDPTKNMLSNLSPYLHFGQISSQRVVLEVE
KAESNPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAH
RNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYMRMYWAKKIL
EWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREV
TGKIRYMSYEGCKRKFDVKLYIEKYSA

3D structure

PDB

8oyb Time-resolved crystallography captures light-driven DNA repair

Chain

Resolution

2.25 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

4.1.99.3: deoxyribodipyrimidine photo-lyase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	B	A160 H161 R256 N257 E301 W305 Y376 M379 W421 W431 R441 Y442 M443 S444 R450 K451	A158 H159 R220 N221 E265 W269 Y340 M343 W385 W395 R405 Y406 M407 S408 R414 K415
BS02	dna	B	W328 R429 A430 W431 R450	W292 R393 A394 W395 R414
BS03	FDA	B	Y252 L264 S265 N266 S268 L271 F298 E301 W305 K306 K372 G375 R378 M379 N403 D409 N414 G415 I419 S422	Y216 L228 S229 N230 S232 L235 F262 E265 W269 K270 K336 G339 R342 M343 N367 D373 N378 G379 I383 S386

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0003677	DNA binding
GO:0003904	deoxyribodipyrimidine photo-lyase activity
GO:0016829	lyase activity

	Biological Process
GO:0000719	photoreactive repair
GO:0006281	DNA repair

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:8oyb, PDBe:8oyb, PDBj:8oyb
PDBsum	8oyb
PubMed	38033070
UniProt	Q8PYK9

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