Structure of PDB 8oya Chain B

Receptor sequence

>8oyaB (length=417) Species: 192952 (Methanosarcina mazei Go1) [Search protein sequence]

RIRALKSGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEF
LEAGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAG
TLVTDFSPLRIKNQWIEKVISGISIPFFEVDAHNVVPCWEASQKHEYAAH
TFRPKLYALLPEFLEEFPELEPNSVTDPLFEPWHFEPGEKAAKKVMESFI
ADRLDSYGALRNDPTKNMLSNLSPYLHFGQISSQRVVLEVEKAESNPGSK
KAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIY
TLEEFEAGKTHDPLWNASQMELLSTGKMHGYMRMYWAKKILEWSESPEKA
LEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSY
EGCKRKFDVKLYIEKYS

3D structure

PDB

8oya Time-resolved crystallography captures light-driven DNA repair

Chain

Resolution

2.18 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

4.1.99.3: deoxyribodipyrimidine photo-lyase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	B	A160 H161 R256 N257 E301 W305 M379 R429 W431 R441 Y442 M443 S444 G447 R450 K451	A149 H150 R211 N212 E256 W260 M334 R384 W386 R396 Y397 M398 S399 G402 R405 K406
BS02	dna	B	Y158 R429 A430 W431 E433 K439	Y147 R384 A385 W386 E388 K394
BS03	FDA	B	Y252 L264 S265 N266 S268 F298 E301 W305 K306 K372 G375 R378 N403 D409 N414 G415 G418	Y207 L219 S220 N221 S223 F253 E256 W260 K261 K327 G330 R333 N358 D364 N369 G370 G373

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0003677	DNA binding
GO:0003904	deoxyribodipyrimidine photo-lyase activity
GO:0016829	lyase activity

	Biological Process
GO:0000719	photoreactive repair
GO:0006281	DNA repair

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Molecular Function

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Biological Process

External links

PDB	RCSB:8oya, PDBe:8oya, PDBj:8oya
PDBsum	8oya
PubMed	38033070
UniProt	Q8PYK9

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