Structure of PDB 8ojh Chain B

Receptor sequence
>8ojhB (length=375) Species: 9606 (Homo sapiens) [Search protein sequence]
PNIINFDTSLPTSHTYLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIP
GQTLPLQLFHPQEVSMVRNLIQKDRTFAVLAYSNVQEREAQFGTTAEIYA
YREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQAKVQILPECVLPST
MSAVQLESLNKCQIFPSKPSYKWWQKYQKRKFHCANLTSWPRWLYSLYDA
ETLMDRIKKQLREWDENDSLPSNPIDFSYRVAACLPIDDVLRIQLLKIGS
AIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPH
GYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFT
ATKKDMSPQKFWGLTRSALLPTIPD
3D structure
PDB8ojh A degron blocking strategy towards improved CRL4CRBN recruiting PROTAC selectivity.
ChainB
Resolution2.72 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C323 C326 C391 C394 C270 C273 C338 C341
BS02 VP9 B N351 P352 H353 H378 S379 W380 W386 W400 F402 N298 P299 H300 H325 S326 W327 W333 W347 F349
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0044325 transmembrane transporter binding
GO:0046872 metal ion binding
Biological Process
GO:0016567 protein ubiquitination
GO:0030177 positive regulation of Wnt signaling pathway
GO:0031333 negative regulation of protein-containing complex assembly
GO:0031334 positive regulation of protein-containing complex assembly
GO:0034766 negative regulation of monoatomic ion transmembrane transport
GO:0035641 locomotory exploration behavior
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
GO:1902607 negative regulation of large conductance calcium-activated potassium channel activity
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016020 membrane
GO:0031464 Cul4A-RING E3 ubiquitin ligase complex
GO:0048471 perinuclear region of cytoplasm

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Molecular Function
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Cellular Component
External links
PDB RCSB:8ojh, PDBe:8ojh, PDBj:8ojh
PDBsum8ojh
PubMed37418539
UniProtQ96SW2|CRBN_HUMAN Protein cereblon (Gene Name=CRBN)

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