Structure of PDB 8oja Chain B

Receptor sequence
>8ojaB (length=266) Species: 10306 (Human alphaherpesvirus 1 strain KOS) [Search protein sequence]
GAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQV
FLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAI
TGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQ
LRLTRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEN
AKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLCVT
ATGPNAVSAVFLLKPQ
3D structure
PDB8oja Dynamics of the Herpes simplex virus DNA polymerase holoenzyme during DNA synthesis and proof-reading revealed by Cryo-EM
ChainB
Resolution1.87 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B R51 T52 R280 R24 T25 R228
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030337 DNA polymerase processivity factor activity
Biological Process
GO:0006260 DNA replication
GO:0039686 bidirectional double-stranded viral DNA replication
Cellular Component
GO:0042025 host cell nucleus
GO:0042575 DNA polymerase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8oja, PDBe:8oja, PDBj:8oja
PDBsum8oja
PubMed38806233
UniProtP10226|PAP_HHV11 DNA polymerase processivity factor (Gene Name=UL42)

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