Structure of PDB 8k29 Chain B

Receptor sequence

>8k29B (length=246) Species: 979527 (Vibrio phage ICP1_2004_A) [Search protein sequence]

MRKFIIVKNVKVDGINAKSSDITVGMPPATTFCGLGETMSIKTGIVVKAV
SYGSVKFEVRGSRFNTSVTKFAWQDRGNGGKANNNSPIQPKPLADGVFTL
CFEVEWEDCAEVLVDKVTNFINTARIAGGTIASFNKPFVKVAKDAEELAS
VKNAMMPCYVVVDCGVEVNIFEDAVNRKLQPMVNGYKKLEKIVDNKHMRD
KFTPAYLATPTYTMIGYKMVSNVDNFDQALWQYGENTKVKTIGGIY

3D structure

PDB

8k29 Structure of csy complex with long DNA State2

Chain

Resolution

3.18 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	B	N16 K18 S19 S20 T30 T31 G34 L35 E37 T38 K70 F71 A72 Q74 K91 R125 A127 G128 R199 P210 Y233	N16 K18 S19 S20 T30 T31 G34 L35 E37 T38 K70 F71 A72 Q74 K91 R125 A127 G128 R199 P210 Y233
BS02	dna	B	N85 S86 P87	N85 S86 P87
BS03	dna	B	R63 F64 N153 M156 P157 Y159 Y217 K218 M219 S221 N222	R63 F64 N153 M156 P157 Y159 Y217 K218 M219 S221 N222

External links

PDB	RCSB:8k29, PDBe:8k29, PDBj:8k29
PDBsum	8k29
PubMed
UniProt	F1D5V7

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