Structure of PDB 8k06 Chain B

Receptor sequence
>8k06B (length=304) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
RSLVKISPQVSEALSNGRAVVALESTIISHGMPYPQNLQTAKEVESIVRE
NGAIPATIAILNGVPCIGLSEEELERLASLGKSVQKTAGRDIANVVATRG
NGATTVSATLFFASMVGIQVFVTGGIGGVHRHANHSMDISSDLTALGRTP
IAVISAGVASILDIPKTLEYLETQEVYVAAYKSDEFPAFFTEKSGCKAPS
RVNSPEDCARVIDANMKLNRQAGILFAIPIPKHHSAAGNLIESATQRALT
EAREQNVTGNAETPFLLARVNELTGGTSLAANIALVKNNALIGSQIAVAL
SQLM
3D structure
PDB8k06 Structure and function of the pseudouridine 5'-monophosphate glycosylase PUMY from Arabidopsis thaliana.
ChainB
Resolution1.845 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 4.2.1.70: pseudouridylate synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 RP5 B K112 R116 T131 S166 S167 K86 R90 T105 S140 S141
Gene Ontology
Molecular Function
GO:0004730 pseudouridylate synthase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0016829 lyase activity
GO:0030597 RNA glycosylase activity
GO:0046872 metal ion binding
Biological Process
GO:0001522 pseudouridine synthesis
Cellular Component
GO:0005777 peroxisome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8k06, PDBe:8k06, PDBj:8k06
PDBsum8k06
PubMed38117089
UniProtQ84K35|PUMY_ARATH Pseudouridine-5'-phosphate glycosidase (Gene Name=PUMY)

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