Structure of PDB 8j6m Chain B

Receptor sequence
>8j6mB (length=641) Species: 6100 (Aequorea victoria) [Search protein sequence]
RGADFDHVYSGVVNLSTENIYSFNYTSQPDQVTAVRVYVNSSSENLNYPV
LVVVRQQKEVLSWQVPLLFQGLYQRSYNYQEVSRTLCPSEATNETGPLQQ
LIFVDVASMAPLGAQYKLLVTKLKHFQLRTNVAFHFTASPSQPQYFLYKF
PKDVDSVIIKVVSEMAYPCSVVSVQNIMCPVYDLDHNVEFNGVYQSMTKK
AAITLQKKDFPGEQFFVVFVIKPEDYACGGSFFNLQRKKNLEVTIVPSIK
ESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQRKKYKIYFWNIITIAV
FYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHPLGVLSAFNNILSNLG
HVLLGFLFLLIVLRRDILHRRALEAKDIFAVEYGIPKHFGLFYAMGIALM
MEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINASAYS
AYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYDRMVL
LVVGNLVNWSFALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSS
EKVLPVPLFCIVATAVMWAAALYFFFQNLSSWEGTPAESREKNRECILLD
FFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF
3D structure
PDB8j6m SIDT1 protein
ChainB
Resolution2.77 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CLR B Y579 M580 S603 S607 F608 V611 Y426 M427 S450 S454 F455 V458
BS02 CLR B M586 Y590 Q646 I647 F717 M433 Y437 Q493 I494 F531
BS03 CLR B S603 S607 S450 S454
BS04 CLR B A639 S640 A642 L643 N720 A486 S487 A489 L490 N534
BS05 ZN B H563 D574 H791 H795 H410 D421 H605 H609
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003725 double-stranded RNA binding
GO:0015485 cholesterol binding
GO:0051033 RNA transmembrane transporter activity
Biological Process
GO:0006091 generation of precursor metabolites and energy
GO:0008218 bioluminescence
GO:0050658 RNA transport
Cellular Component
GO:0005764 lysosome
GO:0005886 plasma membrane
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8j6m, PDBe:8j6m, PDBj:8j6m
PDBsum8j6m
PubMed38664565
UniProtQ9NXL6|SIDT1_HUMAN SID1 transmembrane family member 1 (Gene Name=SIDT1)

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