Structure of PDB 8ip0 Chain B

Receptor sequence

>8ip0B (length=299) Species: 1147 (Synechocystis sp. PCC 6714) [Search protein sequence]

NLNLFATILTYPAPASNYRGESEENRSVIQKILKDGQKYAIISPESMRNA
LREMLIELGQPNNRTRLHSEDQLAVEFKEYPNPDKFADDFLFGYMVAQTN
DAKEMKKLNRPAKRDSIFRCNMAVAVNPYKYDTVFYQSPLNAGDSAWKNS
TSSALLHREVTHTAFQYPFALAGKDCAAKPEWVKALLQAIAELNGVAGGH
ARAYYEFAPRSVVARLTPKLVAGYQTYGFDAEGNWLELSRLTATDSDNLD
LPANEFWLGGELVRKMDQEQKAQLEAMGAHLYANPEKLFADLADSFLGV

3D structure

PDB

8ip0 Cryo-EM structure of type I-B Cascade bound to a PAM-containing dsDNA target at 3.6 angstrom resolution.

Chain

Resolution

3.6 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	B	Y20 R21 G22 E47 R50 R54 R66 R68 V77 F94 Y96 K115 R116 Y138 Q139 S140 P141 G200 G201 R204	Y18 R19 G20 E45 R48 R52 R64 R66 V75 F92 Y94 K113 R114 Y136 Q137 S138 P139 G198 G199 R202
BS02	dna	B	N27 Y138 S140 S152 L157 L158	N25 Y136 S138 S150 L155 L156

External links

PDB	RCSB:8ip0, PDBe:8ip0, PDBj:8ip0
PDBsum	8ip0
PubMed	38750051
UniProt	A0A068N458

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