Structure of PDB 8ic7 Chain B

Receptor sequence
>8ic7B (length=855) Species: 69365 (Microbacterium arabinogalactanolyticum) [Search protein sequence]
SRRARRIPHTAESVAFPLGGIGTGNVSLGARGELRDWEFENLPDKGRLNP
RSFFAIHAAPQGGPSATRVLEARSSGRHDRDAGYGFDELAGLPRLDSAGL
HGEYPVVDIDFTDATLPVTVSLHAFTPLVPLDADASGIPAAVLRYRVVNP
GDAPVTVTVVGSMSHTAGRGAPGPDAPWGMRGTQSVRWRESDGIRGLDFD
IDLDHDDPGYGTMSLTTTDSSTTVKPQWVTSYWPDGARLFWNDLADDGLL
APEARLTLEDKPRGLFAERDADPDAPALTEEQMLAKLPRVRTGSLGIVHT
LAPGEERDFEFVLAWSFPNRRRGWHGHIIFDDALEDGAPDLRDELGPIVR
NHYAVRWPDAWAAAAQLHRDLPALEGATDAFVEELYGGSLDPVLADAVGA
NIAALRSTTCFVLESPTPELGDGPVFAAWEGSFDHGGSCEGTCTHVWSYA
QTAAWLFPGLERSARRAEYLLETDESGAQKFRGNRIFGAPRWFIGPAVDG
QLGTFLRLHREWRFCGDDEFLRELWPAAARTLDYAAREWDHDGDGLLDGE
MHNTYDIEFHGVEPLSNIIHLAALRAGVRMAGHLGDTARAQEWALRADHV
AAAIEGVLWNGEYYRQVIDDVDAHRYQYGDGVLSDQLLGQFHAFLGGLGY
LLPEAHVRSALDAIVQHNHRGDLRDHESTQRVYALNDEGGLLLASWPEGG
RPALPFVYADEVWTGIEHQVAVSLLFAGRYDDALRIERTLRARYDGAHRS
PWNEIECGNHYARSLASWGLLIGASGAQWDAGARTLSFDPVLPGDARFLF
TTATGWGGVEIGDDVITLRLHGGALDLDELRLRGEVAGRGIHLDAGETRT
LTLTL
3D structure
PDB8ic7 Identification and characterization of endo-alpha-, exo-alpha-, and exo-beta-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria.
ChainB
Resolution1.35 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG B D244 D248 L250 D243 D247 L249
BS02 MG B D541 D543 D545 L547 D549 D540 D542 D544 L546 D548
BS03 MG B E539 H542 E538 H541
BS04 BXX B E431 H446 T555 D557 R682 W714 E757 C758 R764 E430 H445 T554 D556 R681 W713 E756 C757 R763
BS05 BXX B R671 D676 H677 R670 D675 H676
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 30 13:33:19 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8ic7', asym_id = 'B', title = 'Identification and characterization of endo-alph...abinomannan and arabinogalactan of mycobacteria. '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8ic7', asym_id='B', title='Identification and characterization of endo-alph...abinomannan and arabinogalactan of mycobacteria. ')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0004553,0005975', uniprot = '', pdbid = '8ic7', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004553,0005975', uniprot='', pdbid='8ic7', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>