Structure of PDB 8hpd Chain B

Receptor sequence
>8hpdB (length=218) Species: 325651 (Bryopsis corticulans) [Search protein sequence]
EWYGPNRAKWLGPYSEGAVPSYLTGEFAGDYGWDTAGLSADPQTFASFRE
AELMHARWAMMGVVGCLTPEALSKYGGVEFGEAVWFKAGAQIFSEGGLDY
LGNPTLVHAQSILAIVWIQAVLMGLCEGYRVAGGPLGEDPGDAMYPGGSF
DPMGMADDPDTFAELKIKEIKNGRLAMFAMTGFFVQAIQTGKGPVECWAE
HIANPFTNNGFVYATKFF
3D structure
PDB8hpd Structural and functional properties of different types of siphonous LHCII trimers from an intertidal green alga Bryopsis corticulans.
ChainB
Resolution2.74 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 CHL B A215 T216 K217 F218 A214 T215 K216 F217
BS02 0UR B M61 V64 F151 D152 P153 M154 A180 F184 Q187 P195 M60 V63 F150 D151 P152 M153 A179 F183 Q186 P194
BS03 0IE B W34 D35 T36 A37 W59 G63 G66 C67 W86 M178 M181 W33 D34 T35 A36 W58 G62 G65 C66 W85 M177 M180
BS04 0IE B Q190 G211 F212 A215 F218 F219 Q189 G210 F211 A214 F217 F218
BS05 CHL B W11 G13 P14 W34 F218 W10 G12 P13 W33 F217
BS06 CHL B G30 D31 Y32 G33 W34 D35 L39 S40 F49 R50 E53 H56 R175 M178 G29 D30 Y31 G32 W33 D34 L38 S39 F48 R49 E52 H55 R174 M177
BS07 CLA B H56 F185 H55 F184
BS08 CLA B M62 V65 G66 F81 L99 Y101 L102 V108 M61 V64 G65 F80 L98 Y100 L101 V107
BS09 CHL B T106 L107 V108 H109 Q111 S112 T105 L106 V107 H108 Q110 S111
BS10 CHL B L99 I119 Q120 M124 L98 I118 Q119 M123
BS11 CHL B F87 G90 Q120 F86 G89 Q119
BS12 CHL B M55 R58 W59 C127 Y130 R131 G135 P136 L137 G138 P147 F151 M54 R57 W58 C126 Y129 R130 G134 P135 L136 G137 P146 F150
BS13 CHL B A52 M55 H56 W59 Q120 M124 G125 E128 R131 A51 M54 H55 W58 Q119 M123 G124 E127 R130
BS14 CLA B R58 M61 M62 Y146 P147 G148 F151 D152 M156 A157 F163 L166 K167 E170 R57 M60 M61 Y145 P146 G147 F150 D151 M155 A156 F162 L165 K166 E169
BS15 CLA B W3 K169 K172 L176 W2 K168 K171 L175
BS16 CLA B K169 N173 L176 K168 N172 L175
BS17 CLA B F179 G183 V186 Q187 T191 C198 H202 N210 G211 F178 G182 V185 Q186 T190 C197 H201 N209 G210
BS18 CHL B H202 I203 P206 N210 F212 H201 I202 P205 N209 F211
BS19 CHL B L114 W118 L113 W117
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Mon Nov 25 10:23:54 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8hpd', asym_id = 'B', title = 'Structural and functional properties of differen...m an intertidal green alga Bryopsis corticulans. '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8hpd', asym_id='B', title='Structural and functional properties of differen...m an intertidal green alga Bryopsis corticulans. ')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0009765,0016020', uniprot = '', pdbid = '8hpd', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009765,0016020', uniprot='', pdbid='8hpd', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>