Structure of PDB 8hmd Chain B

Receptor sequence
>8hmdB (length=1195) Species: 5911 (Tetrahymena thermophila) [Search protein sequence]
MFVFLSKKIGMPNNAKIEAVCWNKEQGWIAAGGEKGILKVLKIEDQRQKD
GSNPTTTGQLLVNNTLEYHTSNVYLVTWNDRYRKLTSVEENGIIVVWAYF
RELQLWKEEMINDRKKSVVRDLKWSPDGQKVCIAYEDGAVIVGSVEGSPL
WRKEFPHKLALIEWSPDSKMMIFGTPEGEVRVYDSQGMEMQRLKIHCLQK
LIDPSKSFSPDLPLAAIDWFPQAKMYTDDTPPGLCIAYQCGRVQLMKNEK
DDEPVLIDTMMKIFTVKWNPSGSMFAISGTQDENGELKGVVQFYSNAGHH
LKTLRVPGSDRVTGVSWEGSGLRIAMAVNQAIFFANIKPDHKWAYMSDGT
LAFAYQKIDRVEYTIIFWDTINNKKNLKFVKNLCCLRASGDLCCIVTELI
GYDLWQIDLCNSIGSPIDSKQINIYPNAVTMTKTHIIVCSQDHVYAWQYK
NQVERLTTFEQQTGLRRVGREQAWFIDKENDSNNQYDKDTYDVEPQSEDV
ICTVAANENFLLVARISGTINVYTFPHISLENKLHIQTRPSQMSLNKDAT
RLAIIDHNGNLNILKITPQGDELLPFEKKECWFVKYSDDIPESFVFMERS
RMYIVNDQTPEEPIITEGYICQYKDFQVKIVYLDDIMKSPDGVLRKEELT
LEIEANILKDIKDQLYKKSMQEMFIVIKQHDNDCLWRVYAKKALEDNDFD
SAENAFVQCKDYASLKFLQRVRELDDRERQRAEIQCYFNKVEEAEEIYNK
IERRDLSIQMRMKLGDWAQVVDQIREGTGQDVELQKARLELGNYYAENFQ
WDKAAKQYALAKYNPGLIEAYTRIQDYEGLEKLIAEIPERNELLQDMGDR
FQQAGLCDAAVKCYEKFGDIKQAIDCCVLLNHWNLAVELAEQYNFVQIEG
LLVQYANQLLEKRRKLEAAELYRKAKRNTEAAKILSQIADDLTERDANPL
NIKKMYVMAALEVDLYKKRMLDATMTGQATSTAKTLNSLITSTINTSSAD
KILNNPWRGAEAWHFFILAQRQLYNGQFKYALKSALRLGEYELEIDQKKI
YSLIAIAAYYNKSFRECSRAFVKLQNLENITEDEKERYEAIAVSIFTKHP
PLDSPCEYTPCVGKNCSQQVSEYDIHCRACGSNFSPCVASGRPIFQKEFY
QCKNCRHKMIESEVSRLKLYNCALCHSPIDFKRFTESNNNNNNNI
3D structure
PDB8hmd Structural insight into the intraflagellar transport complex IFT-A and its assembly in the anterograde IFT train.
ChainB
Resolution4.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 ZN B C1155 C1172 C1155 C1172
Gene Ontology
Biological Process
GO:0042073 intraciliary transport
Cellular Component
GO:0005930 axoneme
GO:0036064 ciliary basal body
GO:0042995 cell projection

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8hmd, PDBe:8hmd, PDBj:8hmd
PDBsum8hmd
PubMed36932088
UniProtQ22U89

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