Structure of PDB 8him Chain B

Receptor sequence
>8himB (length=971) Species: 3712 (Brassica oleracea) [Search protein sequence]
VDLRDLGEPFLQSFCKKAATSFFDEYGLVSHQLNSYNFFIEHGLQSVFES
SGEMLVEPYATVKFGEVSVDKPTLYSDDKELVFLPWHARLQNMTYSARMK
VNVDVEVTQDIPIGRIPVMVKSVLCNTTEYRKGECAFDQGGYFVIKGAEK
VFIAQEQICTKRLWISNSPWTVSYRSETKRNRFIVRLSENQKRKEKVLTV
YFLSTEIPVWVLFFALGVASDKEAVDLIAFDGGDASITNSVVASIQEADS
VCEDFRHGRNALAYVEQQIKGTKFPPGESVDECLSLYLFPGLKSLTQKAR
FLGYMVKCLFSAYAGKRKCENRDNFRNKRIELAGELLERELRVHLAHARR
TMTKAMQRHLTGDGDLKPIEHYLDASIITNGLSRAFSTGAWCHPFRKMER
VSGVVANLGRANPLQSLIDLRRTRQQVLYTGRVGDARYPHPSHWGRLCFL
STPDGENCGLVKNLSLLGLVSTQIMEPVVEELFDSGMEELMDDTSTPLSG
KHKVLLNGDWVGVCSDSDYFVADLKSRRRQSELPRQMEIKLDKDDKEVRI
FTDAGRLLRPLLVVENLHKLKQSKPSKYTFEHLLDQGILELIGIEEEEDC
TTAWGTKQLLKQQKSYTHCELDLSFLLGVSCAIVPFANHDHGRRVLYQSQ
KHCQQAIGFCSTNPNIRCDTLSQQLFYPQRPLFKTMASECLQKDVLFNGQ
NAIVAVNVHLGFNQEDSIVMNKASLERGMFRSEQIRSYKADVDSVVQFGK
THSKIGRVDSLDDDGFPFVGANMHSGDIVIGRCTESGTDHSVKLKHTERG
IVQKVVLSSNDDGKNYATVSLRQVRSPCLGDKFSSMHGQKGVLGYIEEQE
NFAFTNQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPMQKKKGKSD
AYSKVTRHATPFSTPSVDDITDQLHRAGFSRSGNERVYNGRTGEMMRSLI
FMGPNFYQRLIHMSEDKVKFR
3D structure
PDB8him Structure and mechanism of the plant RNA polymerase V.
ChainB
Resolution2.8 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B R450 S453 Y495 R384 S387 Y429
BS02 dna B R236 K240 R243 I245 Y267 K339 F340 R388 R416 F461 K463 M464 L494 R498 G500 A502 R175 K179 R182 I184 Y201 K273 F274 R322 R350 F395 K397 M398 L428 R432 G434 A436
BS03 rna B K717 K917 K651 K840
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Feb 21 20:06:06 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8him', asym_id = 'B', title = 'Structure and mechanism of the plant RNA polymerase V.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8him', asym_id='B', title='Structure and mechanism of the plant RNA polymerase V.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003677,0003899,0006351,0032549', uniprot = '', pdbid = '8him', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003677,0003899,0006351,0032549', uniprot='', pdbid='8him', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>