Structure of PDB 8fod Chain B

Receptor sequence
>8fodB (length=433) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
SSSEEEKKLYARLYESKLSFYDLPPQGEITLEQFEIWAIDRLKILLEIES
CLSRNKSIKEIETIIKPQFQKLLPFNTESLEDRKKDYYSHFILRLCFCRS
KELREKFVRAETFLFKIRFNMLTSTDQTKFVQSLQFISNEEKAELSHQLY
QTVSASLQFQLNLNEEHQRKQYFQQEKFIKLPFENVIELVGNRLVFLKDG
YAYLQQLNLLSNEFASKLNQELIKTYQYLPRLNEDDRLLPILNHLSSGYT
DEINAQSVWSEEISSNYPLCIKNLMEGLKKNHHLRYYGRQQLSLFLKGIG
LSADEALKFWSEAFTMTMEKFNKEYRYSFRHNYGLEGNRINYKPWDCHTI
LSKPRPGRGDYHGCPFRDWSHERLSAELRSMKLTQAQIISVLDSCQKGEY
TIACTKVFEMTHNHIAHPNLYFERSRQLQKKQQ
3D structure
PDB8fod Molecular choreography of primer synthesis by the eukaryotic Pol alpha-primase.
ChainB
Resolution3.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SF4 B P334 L335 C336 C417 C434 C474 P500 P268 L269 C270 C347 C364 C404 P418
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003697 single-stranded DNA binding
GO:0003896 DNA primase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0006260 DNA replication
GO:0006261 DNA-templated DNA replication
GO:0006269 DNA replication, synthesis of primer
GO:0006270 DNA replication initiation
GO:0006302 double-strand break repair
Cellular Component
GO:0005634 nucleus
GO:0005635 nuclear envelope
GO:0005658 alpha DNA polymerase:primase complex
GO:1990077 primosome complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8fod, PDBe:8fod, PDBj:8fod
PDBsum8fod
PubMed37344454
UniProtP20457|PRI2_YEAST DNA primase large subunit (Gene Name=PRI2)

[Back to BioLiP]